modPDZpep: Strucure-based analysis of human PDZ-mediated interaction networks

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List of peptide-bound templates used for modeling PDZ-peptide complexes

PDZ Domain PDB ID Title Identity Method Oligo state Ligand *Remark
AF6 2ain.1.A Afadin 100 NMR monomer 1 x LEU-PHE-SER-THR-GLU-VAL
AHNAK2 2oqs.1.A Disks large homolog 1 26.58 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
APBA1_1 2ka9.1.A Disks large homolog 4 24.04 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
APBA1_2 1q3p.1.A Shank1 31.08 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
APBA2_1 2oqs.1.A Disks large homolog 1 26.19 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
APBA2_2 1rzx.1.A CG5884-PA 26.67 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
APBA3_1 2ka9.1.A Disks large homolog 4 23.08 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
APBA3_2 1tp3.1.A Presynaptic density protein 95 30.38 X-ray, 2.0Å monomer 1 x LYS-LYS-GLU-THR-PRO-VAL
ARHGEF11 2os6.1.A Rho guanine nucleotide exchange factor 12 73.75 NMR monomer 1 x VAL-GLU-ASN-LYS-VAL-THR-ASP-LEU
RhoGEF12_ARHGEF12 2os6.1.A Rho guanine nucleotide exchange factor 12 100 NMR monomer 1 x VAL-GLU-ASN-LYS-VAL-THR-ASP-LEU first template
CARD10_CARMA3 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 20 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
Carma1_CARD11 1be9.1.A PSD-95 25.88 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
Carma2_CARD14 1be9.1.A PSD-95 25.58 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
CNK1 2ka9.1.A Disks large homolog 4 17.72 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
CNKSR2 1be9.1.A PSD-95 20.22 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
CNKSR3 1be9.1.A PSD-95 20.45 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
CASK 1rzx.1.A CG5884-PA 29.27 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
PSCDBP 2egn.1.A General receptor for phosphoinositides 1-associated scaffold protein 46.67 X-ray, 2.4Å homo-dimer 2 x SER-SER-SER-SER-LEU
DLG1_1 2ka9.1.A Disks large homolog 4 90.74 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL first template
DLG1_2 2ka9.1.A Disks large homolog 4 86.52 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
DLG1_3 1be9.1.A PSD-95 83.87 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
DLG2_1 2ka9.1.A Disks large homolog 4 87.04 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL first template
DLG2_2 2mho.1.A Disks large homolog 4 53.41 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
DLG2_3 1be9.1.A PSD-95 80.65 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
DLG3_1 2ka9.1.A Disks large homolog 4 77.98 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
DLG3_2 2ka9.1.A Disks large homolog 4 78.65 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
DLG3_3 3jxt.1.A Disks large homolog 3 100 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL First template was 2xkx, hence modeled with 3jxt only.
DLG4_1 2ka9.1.A Disks large homolog 4 100 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL first template
DLG4_2 2ka9.1.A Disks large homolog 4 100 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
DLG4_3 1be9.1.A PSD-95 94.62 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL First template was 2xkx, hence modeled with 1be9 only.
DLG5_1 2ka9.1.A Disks large homolog 4 38.14 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
DLG5_2 2ka9.1.A Disks large homolog 4 33.72 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
DLG5_3 1be9.1.A PSD-95 36.84 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
DLG5_4 1be9.1.A PSD-95 29.55 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
DEPDC6 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 36.36 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU first template
DVL1 2mho.1.A Disks large homolog 4 34.12 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
DVL2 2mho.1.A Disks large homolog 4 32.56 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
DVL3 2mho.1.A Disks large homolog 4 34.12 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
MPP1 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 13.73 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
FRMPD1 1n7f.1.A AMPA receptor interacting protein GRIP 25.93 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
FRMPD2_1 1rgr.1.A Presynaptic density protein 95 31.03 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
FRMPD2_2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 56.98 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
FRMPD2_3 1be9.1.A PSD-95 25.81 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
FRMPD3 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 23.46 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
PDZK10_FRMPD4 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 24.39 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
GIPC1_TIP_2 3r0h.7.A Inactivation-no-after-potential D protein 22.73 X-ray, 2.6Å monomer 1 x ALA-LEU-ARG-ASN-GLY-GLN-TYR-TRP-VAL
GIPC2 3r0h.7.A Inactivation-no-after-potential D protein 21.84 X-ray, 2.6Å monomer 1 x ALA-LEU-ARG-ASN-GLY-GLN-TYR-TRP-VAL
GIPC3 1be9.1.A PSD-95 18.82 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
GOPC 2lob.1.A Golgi-associated PDZ and coiled-coil motif-containing protein 100 NMR monomer 1 x GLU-GLU-VAL-GLN-ASP-THR-ARG-LEU
GRASP 1rgr.1.A Presynaptic density protein 95 25.29 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
GRID2_1 1q3p.1.A Shank1 29.58 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
GRID2_2 1tp3.1.A Presynaptic density protein 95 29.07 X-ray, 2.0Å monomer 1 x LYS-LYS-GLU-THR-PRO-VAL
GRIP1_1 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 33.33 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL first template with 4-residue peptide
GRIP1_2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 35.23 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL first template with 4-residue peptide
GRIP1_3 1n7f.1.B AMPA receptor interacting protein GRIP 29.07 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
GRIP1_4 2oqs.1.A Disks large homolog 1 28.74 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
GRIP1_5 1n7f.1.A AMPA receptor interacting protein GRIP 40.24 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
GRIP1_6 1n7f.1.A AMPA receptor interacting protein GRIP 98.89 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS first template
GRIP1_7 3jxt.1.A Disks large homolog 3 30.49 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
GRIP2_1 1rgr.1.A Presynaptic density protein 95 34.52 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL first template with 4-residue peptide
GRIP2_2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 32.94 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL first template with 4-residue peptide
GRIP2_3 4q6h.1.A CFTR-associated ligand 30.49 X-ray, 1.9Å monomer 1 x SO3, 1 x VAL-GLN-ASP-THR-ARG-LEU
GRIP2_4 2oqs.1.A Disks large homolog 1 29.89 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
GRIP2_5 1b8q.1.A PROTEIN (NEURONAL NITRIC OXIDE SYNTHASE) 34.07 NMR monomer 1 x VAL-VAL-LYS-VAL-ASP-SER-VAL
GRIP2_6 1n7f.1.A AMPA receptor interacting protein GRIP 89.29 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS first template
GRIP2_7 2l4t.1.A Tax1-binding protein 3 32.93 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
HTRA1 2joa.1.A Serine protease HTRA1 100 NMR monomer 1 x ASP-SER-ARG-ILE-TRP-TRP-VAL
HTRA2 2l4t.1.A Tax1-binding protein 3 14.94 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
HTRA3 2l4t.1.A Tax1-binding protein 3 22.47 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
HTRA4 2joa.1.A Serine protease HTRA1 43.88 NMR monomer 1 x ASP-SER-ARG-ILE-TRP-TRP-VAL
IL16_1 1rgr.1.A Presynaptic density protein 95 40.23 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
IL16_2 1rgr.1.A Presynaptic density protein 95 26.74 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
IL16_3 1rgr.1.A Presynaptic density protein 95 29.41 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
IL16_4 2oqs.1.A Disks large homolog 1 30.23 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
InaDl_1 1rgr.1.A Presynaptic density protein 95 33.72 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
InaDl_2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 35.37 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
InaDl_3 2ka9.1.A Disks large homolog 4 35.56 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
InaDl_4 3jxt.1.A Disks large homolog 3 28.57 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
InaDl_5 2oqs.1.A Disks large homolog 1 35.63 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
InaDl_6 1ihj.1.A InaD 32.95 X-ray, 1.8Å monomer 1 x THR-GLU-PHE-CYS-ALA
InaDl_7 1be9.1.A PSD-95 27.78 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
InaDl_8 1be9.1.A PSD-95 45.65 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
InaDl_9 1tp3.1.A Presynaptic density protein 95 43.82 X-ray, 2.0Å monomer 1 x LYS-LYS-GLU-THR-PRO-VAL
InaDl_10 1be9.1.A PSD-95 31.58 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
PDZD6 2joa.1.A Serine protease HTRA1 16.88 NMR monomer 1 x ASP-SER-ARG-ILE-TRP-TRP-VAL
ErbinLAP2 1mfl.1.A Erb-B2 INTERACTING PROTEIN 100 X-ray, 1.9Å monomer 1 x LEU-ASP-VAL-PRO-VAL first template
FLJ00011 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 34.12 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
ZASP_LDB3 1rgr.1.A Presynaptic density protein 95 31.33 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
LIMK1 2oqs.1.A Disks large homolog 1 21.95 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
LIMK2 1ihj.2.A InaD 24.42 X-ray, 1.8Å monomer 1 x THR-GLU-PHE-CYS-ALA
LIN7A 2ka9.1.A Disks large homolog 4 40.43 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
LIN7B 2ka9.1.A Disks large homolog 4 40.43 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
LIN7C 2ka9.1.A Disks large homolog 4 41.49 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
LMO7 1b8q.1.A PROTEIN (NEURONAL NITRIC OXIDE SYNTHASE) 20.88 NMR monomer 1 x VAL-VAL-LYS-VAL-ASP-SER-VAL
LNX1_1 1rgr.1.A Presynaptic density protein 95 35.29 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
LNX1_2 3jxt.1.A Disks large homolog 3 34.12 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
LNX1_3 2oqs.1.A Disks large homolog 1 38.37 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
LNX1_4 1rgr.1.A Presynaptic density protein 95 30.68 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
LNX2_1 1rgr.1.A Presynaptic density protein 95 34.12 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
LNX2_2 1be9.1.A PSD-95 34.02 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
LNX2_3 1rgr.1.A Presynaptic density protein 95 32.18 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
LNX2_4 1rgr.1.A Presynaptic density protein 95 37.93 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
LRRC7 1n7t.1.A 99-mer peptide of densin-180-like protein 68.48 NMR monomer 1 x THR-GLY-TRP-GLU-THR-TRP-VAL first template
MAGI1_1 3jxt.1.A Disks large homolog 3 23.17 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
MAGI1_2 2i04.1.A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 100 X-ray, 2.1Å homo-dimer 1 x ARG-GLU-THR-GLN-VAL, 1 x ARG-ARG-ARG-GLU-THR-GLN-VAL
MAGI1_3 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 34.15 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
MAGI1_4 1tp3.1.A Presynaptic density protein 95 31.18 X-ray, 2.0Å monomer 1 x LYS-LYS-GLU-THR-PRO-VAL
MAGI1_5 1q3p.1.A Shank1 24.51 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
MAGI1_6 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 37.5 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
MAGI2_1 2ka9.1.A Disks large homolog 4 25 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
MAGI2_2 2i04.1.A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 73.49 X-ray, 2.1Å homo-dimer 1 x ARG-GLU-THR-GLN-VAL, 1 x ARG-ARG-ARG-GLU-THR-GLN-VA
MAGI2_3 1rgr.1.A Presynaptic density protein 95 27.85 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
MAGI2_4 1rgr.1.A Presynaptic density protein 95 32.94 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
MAGI2_5 1q3p.1.B Shank1 25.56 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
MAGI2_6 1rgr.1.A Presynaptic density protein 95 34.94 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
MAGI3_1 2i04.1.A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 29.17 X-ray homo-dimer 1 x ARG-GLU-THR-GLN-VAL, 1 x ARG-ARG-ARG-GLU-THR-GLN-VAL
MAGI3_2 2i04.1.A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 60.98 X-ray, 2.1Å homo-dimer 1 x ARG-GLU-THR-GLN-VAL, 1 x ARG-ARG-ARG-GLU-THR-GLN-VAL
MAGI3_3 3r0h.7.A Inactivation-no-after-potential D protein 21.18 X-ray, 2.6Å monomer 1 x ALA-LEU-ARG-ASN-GLY-GLN-TYR-TRP-VAL
MAGI3_4 1rgr.1.A Presynaptic density protein 95 35.71 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
MAGI3_6 1n7f.1.B AMPA receptor interacting protein GRIP 33.72 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
MAGI3_5 1q3p.1.A Shank1 39.53 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
FLJ21687_JM_10_Pdzx 1n7f.1.B AMPA receptor interacting protein GRIP 29.55 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
MAST1 1q3p.1.B Shank1 30.68 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
MAST2 1q3p.1.B Shank1 27.27 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
MAST3 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 31.03 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
MAST4 2egn.1.A General receptor for phosphoinositides 1-associated scaffold protein 29.07 X-ray, 2.4Å homo-dimer 2 x SER-SER-SER-SER-LEU
MUPP1_1 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 33.71 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
MUPP1_2 1be9.1.A PSD-95 38.55 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
MUPP1_3 2ka9.1.A Disks large homolog 4 30.85 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
MUPP1_4 2mho.1.A Disks large homolog 4 30.86 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VA
MUPP1_5 2ka9.1.A Disks large homolog 4 44.83 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
MUPP1_6 1be9.1.A PSD-95 30.61 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL first template
MUPP1_7 1q3p.1.B Shank1 25 X-ray, 2.2Å homo-dimer 2 x GLU-ALA-GLN-THR-ARG-LEU
MUPP1_8 1rgr.1.A Presynaptic density protein 95 41.18 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
MUPP1_9 1n7f.1.A AMPA receptor interacting protein GRIP 39.77 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
MUPP1_10 2ka9.1.A Disks large homolog 4 40.82 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
MUPP1_11 1tp3.1.A Presynaptic density protein 95 42.86 X-ray, 2.0Å monomer 1 x LYS-LYS-GLU-THR-PRO-VAL
MUPP1_12 2oqs.1.A Disks large homolog 1 36.05 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
MUPP1_13 2mho.1.A Disks large homolog 4 50 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
MPP2 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 22.78 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
MPP3 1n7f.1.B AMPA receptor interacting protein GRIP 29.76 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
MPP4 3qjn.1.A SH3 and multiple ankyrin repeat domains protein 1 32.53 X-ray, 2.7Å monomer 1 x ASP-GLU-THR-ASN-LEU
MPP5 1n7f.1.A AMPA receptor interacting protein GRIP 34.57 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
MPP6 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 21.59 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
MPP7 1n7f.1.A AMPA receptor interacting protein GRIP 31.33 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
MYO18A 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 34.38 NMR monomer 1 x GLN-ASP-THR-ARG-LEU first template
Neurabin_1 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 40.7 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
Neurabin_2 2ka9.1.A Disks large homolog 4 35.23 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
NHERF1_1 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 100 NMR monomer 1 x GLN-ASP-THR-ARG-LEU first template
NHERF1_2 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 100 NMR monomer 1 x GLN-ASP-THR-ARG-LEU first template
NHERF2_1 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 65.31 NMR monomer 1 x GLN-ASP-THR-ARG-LEU first template
NHERF2_2 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 66.67 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK1_1 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 42.55 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK1_2 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 41.41 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK1_3 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 47.78 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK1_4 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 37.62 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK2_1_PDZD3_1 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 39.76 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK2_2_PDZD3_2 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 32.99 NMR monomer 1 x GLN-ASP-THR-ARG-LEU first template
PDZK2_3_PDZD3_3 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 45.56 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK2_4_PDZD3_4 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 28.57 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
NOS1 1b8q.1.A PROTEIN (NEURONAL NITRIC OXIDE SYNTHASE) 99.04 NMR monomer 1 x VAL-VAL-LYS-VAL-ASP-SER-VAL
PAR3B_1 1rgr.1.A Presynaptic density protein 95 17.78 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PAR3B_2 2mho.1.A Disks large homolog 4 39.53 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
PAR3B_3 2ka9.1.A Disks large homolog 4 40.23 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
PAR_6A_TIP40 1rzx.1.A CG5884-PA 85.11 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
PAR_6B 1rzx.1.A CG5884-PA 84.04 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
PAR_6G 1rzx.1.A CG5884-PA 86.17 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
PAR3_1 2l4t.1.A Tax1-binding protein 3 19.35 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
PAR3_2 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 39.13 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PAR3_3 2ka9.1.A Disks large homolog 4 40.21 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
PICCOLO 1rzx.1.A CG5884-PA 29.55 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
PDLIM1 2mho.1.A Disks large homolog 4 27.71 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
PDLIM2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 29.41 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
PDLIM3 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 32.14 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDLIM4 1rgr.1.A Presynaptic density protein 95 28.57 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PDLIM5 1rgr.1.A Presynaptic density protein 95 25.3 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PDLIM7 2mho.1.A Disks large homolog 4 31.4 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
PDZK11 1be9.1.A PSD-95 36.78 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
PDZK3_2 2ka9.1.A Disks large homolog 4 43.18 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
PDZK3_3 1rgr.1.A Presynaptic density protein 95 38.82 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PDZK3_4 1rgr.1.A Presynaptic density protein 95 32.18 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PDZK3_5 1rgr.1.A Presynaptic density protein 95 32.94 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PDZK3_6 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 35.23 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
PDZK4 2ka9.1.A Disks large homolog 4 30.23 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
PDZK7_1 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 31.46 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
PDZK7_2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 38.37 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
PDZK8 1be9.1.A PSD-95 16.48 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
PICK1 4q6h.1.A CFTR-associated ligand 27.71 X-ray, 1.9Å monomer 1 x SO3, 1 x VAL-GLN-ASP-THR-ARG-LEU
Periaxin 1mfl.1.A Erb-B2 INTERACTING PROTEIN 32.91 X-ray, 1.9Å monomer 1 x LEU-ASP-VAL-PRO-VAL
Prex1_1 3cyy.1.B Tight junction protein ZO-1 23.08 X-ray, 2.4Å homo-dimer 2 x ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE
Prex1_2 2m0u.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 33.33 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
DEPDC2_PREX2_1 3cyy.1.B Tight junction protein ZO-1 21.79 X-ray, 2.4Å homo-dimer 2 x ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE
DEPDC2_PREX2_2 3jxt.1.A Disks large homolog 3 27.06 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
PTPN13_PTPL1_PTP1E_1 3jxt.1.A Disks large homolog 3 45.35 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
PTPN13_PTPL1_PTP1E_2 3lny.1.A Tyrosine-protein phosphatase non-receptor type 13 100 X-ray, 1.3Å homo-hexamer 6 x GLU-GLN-VAL-SER-ALA-VAL
PTPN13_PTPL1_PTP1E_3 2ka9.1.A Disks large homolog 4 31.91 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
PTPN13_PTPL1_PTP1E_4 2i0l.2.A Disks large homolog 1 44.59 X-ray monomer 1 x ARG-GLU-THR-GLN-VAL
PTPN13_PTPL1_PTP1E_5 2mho.1.A Disks large homolog 4 32.56 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
PTPN3_PTPH1 1rgr.1.A Presynaptic density protein 95 26.51 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PTPN4 1rgr.1.A Presynaptic density protein 95 25.3 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
PDZRN3_1_LNX3_1 2mho.1.A Disks large homolog 4 37.78 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
PDZRN3_2_LNX3_2 2ka9.1.A Disks large homolog 4 31.03 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
PDZRN4_1_LNX4_1 2l4t.1.A Tax1-binding protein 3 44.32 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
PDZRN4_2_LNX4_2 2l4t.1.A Tax1-binding protein 3 30.34 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
FLJ10324_Kiaa1849_hypotheticalproteinLOC55698 1be9.1.A PSD-95 27.96 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
RGS12 1be9.1.A PSD-95 36.67 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
RGS3 1rgr.1.A Presynaptic density protein 95 28.75 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
ARHGAP21 4c2f.1.A CARBOXY-TERMINAL PROCESSING PROTEASE CTPB 19.23 X-ray, 2.4Å monomer 1 x ALA-ALA-ALA-ALA-SER-ALA-ALA, 1 x ALA-ALA-ALA
Rhophilin_1 2m0v.1.A Na(+)/H(+) exchange regulatory cofactor NHE-RF1 30.38 NMR monomer 1 x GLN-ASP-THR-ARG-LEU
Rhophilin_2 1tp3.1.A Presynaptic density protein 95 22.99 X-ray, 2.0Å monomer 1 x LYS-LYS-GLU-THR-PRO-VAL
RIMS1 1be9.1.A PSD-95 29.21 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
RIMS2 2ain.1.A Afadin 28.92 NMR monomer 1 x LEU-PHE-SER-THR-GLU-VAL
RAPGEF2 3jxt.1.A Disks large homolog 3 34.94 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
RAPGEF6 3jxt.1.A Disks large homolog 3 34.94 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
SCRIBBLE1_LAP4_1 2ka9.1.A Disks large homolog 4 42.22 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
SCRIBBLE1_LAP4_2 1rgr.1.A Presynaptic density protein 95 40.45 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
SCRIBBLE1_LAP4_3 1be9.1.A PSD-95 36.46 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
SCRIBBLE1_LAP4_4 1n7t.1.A 99-mer peptide of densin-180-like protein 36.78 NMR monomer 1 x THR-GLY-TRP-GLU-THR-TRP-VAL
SDCBP_SYNTENIN1_1 1be9.1.A PSD-95 29.03 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
SDCBP_SYNTENIN1_2 1rgr.1.A Presynaptic density protein 95 26.67 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
SDCBP2_SYNTENIN2_1 2ka9.1.A Disks large homolog 4 21.65 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
SDCBP2_SYNTENIN2_2 2oqs.1.A Disks large homolog 1 16 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
SHANK1 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 100 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU first template
SHANK2 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 83.65 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU first template
SHANK3 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 81.82 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
Shroom2 1n7f.1.B AMPA receptor interacting protein GRIP 32.93 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
Shroom3 1n7f.1.A AMPA receptor interacting protein GRIP 29.55 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
SHROOM4_Shroom2 3jxt.1.A Disks large homolog 3 30.68 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
SIPA1L1 3ch8.1.A fusion protein PDZ-Fibronectin 26.76 X-ray, 1.9Å monomer 1 x PRO-GLN-PRO-VAL-ASP-SER-TRP-VAL
SIPA1L2 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 26.32 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
SIPA1L3 3qjn.1.A SH3 and multiple ankyrin repeat domains protein 1 27.63 X-ray, 2.7Å monomer 1 x ASP-GLU-THR-ASN-LEU
SIPA1 1n7f.1.B AMPA receptor interacting protein GRIP 23.08 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
SNTA1 2pdz.1.A SYNTROPHIN 98.81 NMR monomer 1 x LYS-GLU-SER-LEU-VAL
SNTB1 2pdz.1.A SYNTROPHIN 80.95 NMR monomer 1 x LYS-GLU-SER-LEU-VAL
SNTB2 2pdz.1.A SYNTROPHIN 76.19 NMR monomer 1 x LYS-GLU-SER-LEU-VAL
SNTG1 2pdz.1.A SYNTROPHIN 45.24 NMR monomer 1 x LYS-GLU-SER-LEU-VAL
SNTG2 2pdz.1.A SYNTROPHIN 53.57 NMR monomer 1 x LYS-GLU-SER-LEU-VAL
SNX27 3qgl.1.A Sorting nexin-27 98.92 X-ray, 3.3Å monomer 1 x GLU-SER-GLU-SER-LYS-VAL
STXBP4_1 1rgr.1.A Presynaptic density protein 95 30.68 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
SYNJ2BP 2mho.1.A Disks large homolog 4 45.56 NMR monomer 1 x VAL-VAL-SER-GLU-ARG-ILE-SER-SER-VAL
SYNPO2 3kze.1.A T-lymphoma invasion and metastasis-inducing protein 1 30.43 X-ray homo-trimer 1 x SER-ARG-LYS-GLU-TYR-TYR-ALA, 1 x ARG-LYS-GLU-TYR-TYR-ALA
SYNPO2L 1n7f.1.B AMPA receptor interacting protein GRIP 27.91 X-ray, 1.8Å homo-dimer 2 x ALA-THR-VAL-ARG-THR-TYR-SER-CYS
TIAM1 3kze.1.B T-lymphoma invasion and metastasis-inducing protein 1 100 X-ray, 1.8Å homo-trimer 1 x SER-ARG-LYS-GLU-TYR-TYR-ALA, 1 x ARG-LYS-GLU-TYR-TYR-ALA
TIAM2 1rzx.1.A CG5884-PA 31.76 X-ray, 2.1Å monomer 1 x ACE-VAL-LYS-GLU-SER-LEU-VAL
TIP_1 2l4t.1.A Tax1-binding protein 3 100 NMR monomer 1 x LYS-GLU-ASN-LEU-GLU-SER-MET-VAL
HARMONIN_1 3qjn.1.A SH3 and multiple ankyrin repeat domains protein 1 29.41 X-ray, 2.7Å monomer 1 x ASP-GLU-THR-ASN-LEU
HARMONIN_2 2kbs.1.A Harmonin 100 NMR monomer 1 x THR-PRO-LEU-GLU-ILE-THR-GLU-LEU
HARMONIN_3 1rgr.1.A Presynaptic density protein 95 25 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
WHRN_1 3qjm.2.A SH3 and multiple ankyrin repeat domains protein 1 30.59 X-ray, 2.3Å monomer 1 x ASP-GLU-THR-ASN-LEU
WHRN_2 3qjn.1.A SH3 and multiple ankyrin repeat domains protein 1 29.55 X-ray, 2.7Å monomer 1 x ASP-GLU-THR-ASN-LEU
WHRN_3 4oaj.1.A Disks large homolog 1 30 X-ray, 2.3Å monomer 1 x ASN-GLU-LYS-VAL-SER-CYS-VAL
ZO1_1 2ka9.1.A Disks large homolog 4 38.37 NMR monomer 2 x GLN-VAL-VAL-PRO-PHE-SER-SER-SER-VAL
ZO1_2 3cyy.1.B Tight junction protein ZO-1 98.86 X-ray, 2.4Å homo-dimer 2 x ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE first template
ZO1_3 2oqs.1.A Disks large homolog 1 45.31 NMR monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
ZO2_1 1rgr.1.A Presynaptic density protein 95 37.21 NMR monomer 1 x BAL, 1 x TYR-LYS-LYS-THR-GLU-VAL
ZO2_2 3cyy.1.A Tight junction protein ZO-1 64.44 X-ray, 2.4Å homo-dimer 2 x ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE
ZO2_3 2i0i.1.A Disks large homolog 1 38.96 X-ray monomer 1 x ARG-ARG-GLU-THR-GLN-VAL
ZO3_1 1be9.1.A PSD-95 36.17 X-ray, 1.8Å monomer 1 x LYS-GLN-THR-SER-VAL
ZO3_2 3cyy.1.B Tight junction protein ZO-1 48.81 X-ray, 2.4Å homo-dimer 2 x ARG-PRO-ARG-PRO-ASP-ASP-LEU-GLU-ILE first template
ZO3_3 3jxt.1.A Disks large homolog 3 38.37 X-ray, 1.5Å monomer 1 x ACE-4DB-ARG-THR-THR-PRO-VAL
*The Remark first template means that same template PDB has been used for modeling the peptide bound and unbound structure of PDZ.